PEER REVIEWED (*undergraduate author)
25. Ingrid Jordon-Thaden; Jonathan Spoelhof; Lyderson Facio-Viccini; Joseph Combs; Francisco Gomez*; Imari Walker*; Douglas Soltis; and Pamela Soltis (2023) Phenotypic trait variation in the North American Tragopogon (Asteraceae) allopolyploid complex, American Journal of Botany. e161189. https://doi.org/10.1002/ajb2.16189.
24. Cantley JT, Jordon-Thaden IE, Roche MD*, Hayes D*, Kate S, and CT Martine. (2023) A foundational population genetics investigation of the sexual systems of Solanum (Solanaceae) in the Australian monsoon tropics suggests dioecious taxa may benefit from increased genetic admixture via obligate outcrossing. Plants. 12(11), 2200. https://doi.org/10.3390/plants12112200
23. Ingrid E. Jordon-Thaden, Lyderson Facio Viccini, Brandon Jordon-Thaden, Jennifer Tate, Srikar Chamala, Grant Godden, Wei Wu, Cheng-Ting Eddy Yeh, Alvis Hu, Patrick S. Schnable, W. Brad Barbazuk, Douglas E. Soltis, Pamela S. Soltis (in revision) Homeolog loss and silencing in synthetic allotetraploid Tragopogon species (Asteraceae) mirror alterations in natural populations, Frontiers in Genetics.
22. Henkhaus N, Bartlett M, Gang D, Grumet R, Jordon-Thaden IE, et al. (2020) Plant science decadal vision 2020-2030: reimagining the potential of plants for a healthy and sustainable future. Plant Direct 1Sept. (https://doi.org/10.1002/pld3.252)
21. Jordon-Thaden IE, Beck J, Rushworth C, Windham M, Diaz N, Cantley J, Martine CT, and C Rothfels. (2020) A basic ddRADseq two-enzyme protocol preforms well with herbarium and silica-dried tissues across four genera. Applications in Plant Sciences, 8(4): e11344, (doi.org/10.1002/aps3.11344)
20. Leebens-Mack, J.H., Barker, M.S., Carpenter, E.J. et al. (2019) One thousand plant transcriptomes and the phylogenomics of green plants. Nature 574, 679–685, doi:10.1038/s41586-019-1693-2
19. Hayes D*, Jordon-Thaden IE, Cantley J, and CT Martine. (2019) Integrated Pest Management (IPM) in the academic small greenhouse setting: A case study using Solanum spp. (Solanaceae). Applications in Plant Science. (https://doi.org/10.1002/aps3.11281)
18. Martine CT, Jordon-Thaden IE, McDonnell AJ, Cantley JT, Hayes DS*, Roche MD*, Frawley ES*, Gilman IS*, and DC Tank. (2019) Phylogeny of the Australian Solanum dioicum group using seven nuclear genes, with consideration of Symon's fruit and seed dispersal hypothesis. PLOS ONE 14(4): e0207564. https://doi.org/10.1371/journal.pone.0207564
17. Martine CT, Cantley JT, Frawley ES*, Butler A*, and IE Jordon-Thaden. (2016) New functionally dioecious bush tomato from northwestern Australia, Solanum ossicruentum, may utilize “trample burr” dispersal. PhytoKeys 63: 19-29.
16. Martine CT, Frawley E*, Cantley JC and IE Jordon-Thaden. (2016) Solanum watneyi, a new bush tomato species from the Northern Territory, Australia named for Mark Watney of the book and film “The Martian”. PhytoKeys 61: 1-13.
15. Martine CT, Boni AJ*, Capaldi EA, Lionheart GE*, and IE Jordon-Thaden. (2016) Fecal seed storage and the apparently trivial effect of megafauna extinction on seed dispersal success in a specialized plant community. Northern Territory Naturalist 27: 68-77.
14. Jordon-Thaden IE, Chanderbali AS, Gitzendanner MA, and Soltis DE. (2015) Modified CTAB and TRIzol® protocols improve RNA extraction from chemically complex Embryophyta. APPS http://www.bioone.org/doi/full/10.3732/apps.1400105
13. Chamala S, García N, Godden GT, Krishnakumar V, Jordon-Thaden IE, Barbazuk WB, Soltis DE, and Soltis PS. (2015) MarkerMiner 1.0: A new bioinformatic workflow and application for phylogenetic marker development using angiosperm transcriptomes. APPS http://www.bioone.org/doi/full/10.3732/apps.1400115#
12. Soltis DS, Segovia-Salcedo MC, Jordon-Thaden IE, Majure L, Miles NM, Mavrodiev EV, Mei W, Cortez MB, Soltis PS, and Gitzendanner MA. (2014) Are polyploids really evolutionary dead-ends (again)? The New Phytologist DOI: 10.1111/nph.12756.
11. Jordon-Thaden IE, Al-Shehbaz IA, and MA Koch. (2013) Species richness of a globally distributed, arctic-alpine genus, Draba L. (Brassicaceae). Alpine Botany, 123: 97-106.
10. Soltis D, Soltis P, Schnable P, Barbazuk B, Chamala S, Chanderbali A, Chester M, Gitzendanner M, Jordon-Thaden IE, and G Stull. (2013) The potential of genomics in plant systematics. Taxon, 62(5): 886-898.
9. Elowsky CG, Jordon-Thaden IE, and RB Kaul. (2013) A morphological analysis of a hybrid swarm of native Ulmus rubra Muhl. and introduced U. pumila L. (Ulmaceae) in southeastern Nebraska. Phytoneuron, 44: 1-23.
8. Godden G, Jordon-Thaden IE, et al. (2012) Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics. Plant Ecology and Diversity, 5: 427-450.
7. Johnson MTJ, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, dePamphilis CW et al. (2012) Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One, e50226.
6. Buggs R, Renny-Byfield S, Chester M, Jordon-Thaden IE, Facio Viccini L, Chamala S, Leitch AR, Schnable PS, Barbazuk WB, Soltis PS, and DE Soltis. (2012) Next-generation sequencing and genome evolution in allopolyploids. American Journal of Botany, 99: 372-382.
5. Al-Shehbaz IA, German D, Karl R, Jordon-Thaden IE, and MA Koch. (2011) Nomenclatural adjustments in the tribe Arabideae (Brassicaceae). Plant Diversity and Evolution, 129(1): 71-76.
4. Jordon-Thaden IE, Hase I, Al-Shehbaz IA, and MA Koch. (2010) Molecular phylogeny and systematics of the genus Draba (Brassicaceae) and identification of its closest related genera. Molecular Phylogenetics and Evolution, 55: 524-540.
3. Calonje M, Martin-Bravo S, Dobeš C, Gong W, Jordon-Thaden IE, Kiefer M, Kiefer C, Paule J, Schmickl R, and MA Koch. (2009) Non-coding nuclear DNA markers in phylogenetic reconstruction. Plant Systematics and Evolution, 282: 257-280.
2. Jordon-Thaden IE and MA Koch. (2008) Diversity and polyploidization patterns in the genus Draba: A first global perspective. Plant Ecology and Diversity, 1(2): 255-263.
1. Jordon-Thaden IE and S Louda (2003) Chemistry of thistles: A role in ecological risk assessment for biological control of weeds? Biochemcial Systematics and Ecology, 31(12): 1353-1396.
25. Ingrid Jordon-Thaden; Jonathan Spoelhof; Lyderson Facio-Viccini; Joseph Combs; Francisco Gomez*; Imari Walker*; Douglas Soltis; and Pamela Soltis (2023) Phenotypic trait variation in the North American Tragopogon (Asteraceae) allopolyploid complex, American Journal of Botany. e161189. https://doi.org/10.1002/ajb2.16189.
24. Cantley JT, Jordon-Thaden IE, Roche MD*, Hayes D*, Kate S, and CT Martine. (2023) A foundational population genetics investigation of the sexual systems of Solanum (Solanaceae) in the Australian monsoon tropics suggests dioecious taxa may benefit from increased genetic admixture via obligate outcrossing. Plants. 12(11), 2200. https://doi.org/10.3390/plants12112200
23. Ingrid E. Jordon-Thaden, Lyderson Facio Viccini, Brandon Jordon-Thaden, Jennifer Tate, Srikar Chamala, Grant Godden, Wei Wu, Cheng-Ting Eddy Yeh, Alvis Hu, Patrick S. Schnable, W. Brad Barbazuk, Douglas E. Soltis, Pamela S. Soltis (in revision) Homeolog loss and silencing in synthetic allotetraploid Tragopogon species (Asteraceae) mirror alterations in natural populations, Frontiers in Genetics.
22. Henkhaus N, Bartlett M, Gang D, Grumet R, Jordon-Thaden IE, et al. (2020) Plant science decadal vision 2020-2030: reimagining the potential of plants for a healthy and sustainable future. Plant Direct 1Sept. (https://doi.org/10.1002/pld3.252)
21. Jordon-Thaden IE, Beck J, Rushworth C, Windham M, Diaz N, Cantley J, Martine CT, and C Rothfels. (2020) A basic ddRADseq two-enzyme protocol preforms well with herbarium and silica-dried tissues across four genera. Applications in Plant Sciences, 8(4): e11344, (doi.org/10.1002/aps3.11344)
20. Leebens-Mack, J.H., Barker, M.S., Carpenter, E.J. et al. (2019) One thousand plant transcriptomes and the phylogenomics of green plants. Nature 574, 679–685, doi:10.1038/s41586-019-1693-2
19. Hayes D*, Jordon-Thaden IE, Cantley J, and CT Martine. (2019) Integrated Pest Management (IPM) in the academic small greenhouse setting: A case study using Solanum spp. (Solanaceae). Applications in Plant Science. (https://doi.org/10.1002/aps3.11281)
18. Martine CT, Jordon-Thaden IE, McDonnell AJ, Cantley JT, Hayes DS*, Roche MD*, Frawley ES*, Gilman IS*, and DC Tank. (2019) Phylogeny of the Australian Solanum dioicum group using seven nuclear genes, with consideration of Symon's fruit and seed dispersal hypothesis. PLOS ONE 14(4): e0207564. https://doi.org/10.1371/journal.pone.0207564
17. Martine CT, Cantley JT, Frawley ES*, Butler A*, and IE Jordon-Thaden. (2016) New functionally dioecious bush tomato from northwestern Australia, Solanum ossicruentum, may utilize “trample burr” dispersal. PhytoKeys 63: 19-29.
16. Martine CT, Frawley E*, Cantley JC and IE Jordon-Thaden. (2016) Solanum watneyi, a new bush tomato species from the Northern Territory, Australia named for Mark Watney of the book and film “The Martian”. PhytoKeys 61: 1-13.
15. Martine CT, Boni AJ*, Capaldi EA, Lionheart GE*, and IE Jordon-Thaden. (2016) Fecal seed storage and the apparently trivial effect of megafauna extinction on seed dispersal success in a specialized plant community. Northern Territory Naturalist 27: 68-77.
14. Jordon-Thaden IE, Chanderbali AS, Gitzendanner MA, and Soltis DE. (2015) Modified CTAB and TRIzol® protocols improve RNA extraction from chemically complex Embryophyta. APPS http://www.bioone.org/doi/full/10.3732/apps.1400105
13. Chamala S, García N, Godden GT, Krishnakumar V, Jordon-Thaden IE, Barbazuk WB, Soltis DE, and Soltis PS. (2015) MarkerMiner 1.0: A new bioinformatic workflow and application for phylogenetic marker development using angiosperm transcriptomes. APPS http://www.bioone.org/doi/full/10.3732/apps.1400115#
12. Soltis DS, Segovia-Salcedo MC, Jordon-Thaden IE, Majure L, Miles NM, Mavrodiev EV, Mei W, Cortez MB, Soltis PS, and Gitzendanner MA. (2014) Are polyploids really evolutionary dead-ends (again)? The New Phytologist DOI: 10.1111/nph.12756.
11. Jordon-Thaden IE, Al-Shehbaz IA, and MA Koch. (2013) Species richness of a globally distributed, arctic-alpine genus, Draba L. (Brassicaceae). Alpine Botany, 123: 97-106.
10. Soltis D, Soltis P, Schnable P, Barbazuk B, Chamala S, Chanderbali A, Chester M, Gitzendanner M, Jordon-Thaden IE, and G Stull. (2013) The potential of genomics in plant systematics. Taxon, 62(5): 886-898.
9. Elowsky CG, Jordon-Thaden IE, and RB Kaul. (2013) A morphological analysis of a hybrid swarm of native Ulmus rubra Muhl. and introduced U. pumila L. (Ulmaceae) in southeastern Nebraska. Phytoneuron, 44: 1-23.
8. Godden G, Jordon-Thaden IE, et al. (2012) Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics. Plant Ecology and Diversity, 5: 427-450.
7. Johnson MTJ, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, dePamphilis CW et al. (2012) Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One, e50226.
6. Buggs R, Renny-Byfield S, Chester M, Jordon-Thaden IE, Facio Viccini L, Chamala S, Leitch AR, Schnable PS, Barbazuk WB, Soltis PS, and DE Soltis. (2012) Next-generation sequencing and genome evolution in allopolyploids. American Journal of Botany, 99: 372-382.
5. Al-Shehbaz IA, German D, Karl R, Jordon-Thaden IE, and MA Koch. (2011) Nomenclatural adjustments in the tribe Arabideae (Brassicaceae). Plant Diversity and Evolution, 129(1): 71-76.
4. Jordon-Thaden IE, Hase I, Al-Shehbaz IA, and MA Koch. (2010) Molecular phylogeny and systematics of the genus Draba (Brassicaceae) and identification of its closest related genera. Molecular Phylogenetics and Evolution, 55: 524-540.
3. Calonje M, Martin-Bravo S, Dobeš C, Gong W, Jordon-Thaden IE, Kiefer M, Kiefer C, Paule J, Schmickl R, and MA Koch. (2009) Non-coding nuclear DNA markers in phylogenetic reconstruction. Plant Systematics and Evolution, 282: 257-280.
2. Jordon-Thaden IE and MA Koch. (2008) Diversity and polyploidization patterns in the genus Draba: A first global perspective. Plant Ecology and Diversity, 1(2): 255-263.
1. Jordon-Thaden IE and S Louda (2003) Chemistry of thistles: A role in ecological risk assessment for biological control of weeds? Biochemcial Systematics and Ecology, 31(12): 1353-1396.